Season 1
- Invasion of the Wicked Invaders
- The Agent
- KuneKune Gets a Chance
- The Krusty Attack
- The Cyber Upgrade
- A Date With a Goth
- Digi-Form is Activated!
- Maggots in Hizumia
- Enter Digital Silver
- Evil Crosses To The Nega Warriors!
- Going Lowered!
- MEGA Science Team: Digital Warriors Vs. IJLSA Adventures
- KuneKune Dies!?
- Detention
- Warriors in Disguise!
- Broken Digi-Form
- Reconize The Smell
- MEGA Science Team: Digital Warriors Vs. Ninja SpongeBob Kakurangers
- Space Patrol Mind Controlled, Part 1
- Space Patrol Mind Controlled, Part 2
- Protect The Digital Red Powers
- The Kakurangers' Second Chance
- Death:The Nega Warriors
- Silver Dangerous
- MEGA Science Team: Digital Warriors Vs. SpongeBob SquarePants, One Formula Driver
- Hall Monitor
- Food Fight
- Repair and Upgraded:Digi-Form
- Night Of The Living KuneKune
- An Oyster Ka-Boom!
Season 2
- (31) Scan Of Viruses
- (32) The Dino Report
- (33) Once a Warrior, Part 1
- (34) Once a Warrior, Part 2
- (35) The Professor Died!?
- (36) The Professor Saved!
- (37) MEGA Science Team: Digital Warriors Vs. Nicktoons Reunited!
- (38) Zoo Animals Unleashed!
- (39) BASS
- (40) Knowing of the MEGA Warriors!
- (41) Yo-Yo Attack
- (42) Fishing Fall
- (43) Happy Scaring!